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1

Limit cycles in models of circular gene networks regulated by negative feedback loops

Likhoshvai, Vitaly A., Golubyatnikov, Vladimir P., Khlebodarova, Tamara M.

Journal:

BMC Bioinformatics

Year:

2020

File:

PDF, 1.43 MB

2020

2

Metabolic engineering in silico

V. A. Likhoshvai, T. M. Khlebodarova, M. T. Ree, N. A. Kolchanov

Journal:

Applied Biochemistry and Microbiology

Year:

2010

Language:

english

File:

PDF, 405 KB

english, 2010

3

Relationship between a Gene Network Graph and Qualitative Modes of Its Functioning

V. A. Likhoshvai, Yu. G. Matushkin, S. I. Fadeev

Journal:

Molecular Biology

Year:

2001

Language:

english

File:

PDF, 67 KB

english, 2001

4

GENERALIZED HILL FUNCTION METHOD FOR MODELING MOLECULAR PROCESSES

LIKHOSHVAI, VITALI, RATUSHNY, ALEXANDER

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 624 KB

english, 2007

5

Theoretical analysis of the regulation of interferon expression during priming and blocking

S.I. Bazhan, V.A. Likhoshvai, O.E. Belova

Journal:

Journal of Theoretical Biology

Year:

1995

Language:

english

File:

PDF, 591 KB

english, 1995

6

A mathematical model for the adenylosuccinate synthetase reaction involved in purine biosynthesis

Evgeniya A Oshchepkova-Nedosekina, Vitalii A Likhoshvai

Journal:

Theoretical Biology and Medical Modelling

Year:

2007

Language:

english

File:

PDF, 4.01 MB

english, 2007

7

Theoretical analysis of the possible mechanisms of interferon induction for priming and blocking

S. I. Bazhan, V. A. Likhoshvai, O. E. Belova

Journal:

Bulletin of Experimental Biology and Medicine

Year:

1993

Language:

english

File:

PDF, 611 KB

english, 1993

8

Nucleotide composition-based prediction of gene expression efficacy

V. A. Likhoshvai, Yu. G. Matushkin

Journal:

Molecular Biology

Year:

2000

Language:

english

File:

PDF, 557 KB

english, 2000

9

Polysaccharides of diatoms occurring in Lake Baikal

S. A. Alekseeva, N. M. Shevchenko, M. I. Kusaykin, L. P. Ponomorenko, V. V. Isakov, T. N. Zvyagintseva, E. V. Likhoshvai

Journal:

Applied Biochemistry and Microbiology

Year:

2005

Language:

english

File:

PDF, 130 KB

english, 2005

10

Synthesis and properties of silver and gold nanocomposites in poly-1-vinyl-1,2,4-triazole matrix

G. F. Prozorova, S. A. Korzhova, T. V. Kon’kova, T. G. Ermakova, A. S. Pozdnyakov, A. N. Sapozhnikov, O. A. Proydakova, B. G. Sukhov, K. Yu. Arsentyev, E. V. Likhoshvai, B. A. Trofimov

Journal:

Journal of Structural Chemistry

Year:

2010

Language:

english

File:

PDF, 372 KB

english, 2010

11

On Differential Equations with Retarded Argument

G. V. Demidenko, V. A. Likhoshvai

Journal:

Siberian Mathematical Journal

Year:

2005

Language:

english

File:

PDF, 188 KB

english, 2005

12

On One Class of Systems of Differential Equations and on Retarded Equations

G. V. Demidenko, V. A. Likhoshvai, T. V. Kotova, Yu. E. Khropova

Journal:

Siberian Mathematical Journal

Year:

2006

Language:

english

File:

PDF, 157 KB

english, 2006

13

Mathematical modeling of the reproduction of the hepatitis C virus replicon in cell culture. Simulation of the action of potential therapeutics

K. D. Bezmaternykh, E. L. Mishchenko, A. V. Ratushny, V. A. Likhoshvai, T. M. Khlebodarova, V. A. Ivanisenko

Journal:

Year:

2006

Language:

english

File:

PDF, 160 KB

english, 2006

14

A cellular automaton model of morphogenesis inArabidopsis thaliana

I. R. Akberdin, E. A. Ozonov, V. V. Mironova, D. N. Gorpinchenko, N. A. Omelyanchuk, V. A. Likhoshvai, N. A. Kolchanov

Journal:

Year:

2006

Language:

english

File:

PDF, 259 KB

english, 2006

15

Mathematical modeling of intracellular membrane transport: Receptor-mediated endocytosis and degradation of low-density lipoproteins

A. V. Ratushny, V. A. Likhoshvai

Journal:

Year:

2006

Language:

english

File:

PDF, 189 KB

english, 2006

16

On the relationship between solutions of delay differential equations and infinite-dimensional systems of differential equations

G. V. Demidenko, V. A. Likhoshvai, A. V. Mudrov

Journal:

Differential Equations

Year:

2009

Language:

english

File:

PDF, 320 KB

english, 2009

17

Gold nanoparticles stabilized with water-soluble biocompatible poly(1-vinyl-1,2,4-triazole)

Myachina, G. F., Kon’kova, T. V., Korzhova, S. A., Ermakova, T. G., Pozdnyakov, A. S., Sukhov, B. G., Arsent’ev, K. Yu., Likhoshvai, E. V., Trofimov, B. A.

Journal:

Doklady Chemistry

Year:

2010

Language:

english

File:

PDF, 149 KB

english, 2010

18

Microbial community of reduced pockmark sediments (Gdansk Deep, Baltic Sea)

O. V. Shubenkova, A. V. Likhoshvai, T. A. Kanapatskii, N. V. Pimenov

Journal:

Year:

2010

Language:

english

File:

PDF, 251 KB

english, 2010

19

Correlation of codon biases and potential secondary structures with mRNA translation efficiency in unicellular organisms

N. V. Vladimirov, V. A. Likhoshvai, Yu. G. Matushkin

Journal:

Molecular Biology

Year:

2007

Language:

english

File:

PDF, 205 KB

english, 2007

20

Bottom bituminous constructions and biota inhabiting them according to investigation of Lake Baikal with theMirsubmersible

O. M. Khlystov, T. I. Zemskaya, T. Ya. Sitnikova, I. V. Mekhanikova, I. A. Kaigorodova, A. G. Gorshkov, O. A. Timoshkin, O. V. Shubenkova, S. M. Chernitsyna, A. V. Lomakina, A. V. Likhoshvai, A. M. Sa

Journal:

Doklady Earth Sciences

Year:

2009

Language:

english

File:

PDF, 287 KB

english, 2009

21

Mathematical model of auxin distribution in the plant root

V. A. Likhoshvai, N. A. Omel’yanchuk, V. V. Mironova, S. I. Fadeev, E. D. Mjolsness, N. A. Kolchanov

Journal:

Russian Journal of Developmental Biology

Year:

2007

Language:

english

File:

PDF, 257 KB

english, 2007

22

Analysis of fragments of therpb1gene sequences of diatoms

I. I. Gabaev, E. V. Likhoshvai, T. A. Shcherbakova, A. S. Ostyak

Journal:

Doklady Biochemistry and Biophysics

Year:

2008

Language:

english

File:

PDF, 323 KB

english, 2008

23

Study of a model of linear biomolecular synthesis with reversible processes

S. I. Fadeev, V. A. Likhoshvai, D. N. Shtokalo

Journal:

Journal of Applied and Industrial Mathematics

Year:

2007

Language:

english

File:

PDF, 657 KB

english, 2007

24

Study of a mathematical model for the autoregulation of Hes7 protein synthesis

S. I. Fadeev, N. A. Omel’yanchuk, V. A. Likhoshvai

Journal:

Journal of Applied and Industrial Mathematics

Year:

2009

Language:

english

File:

PDF, 622 KB

english, 2009

25

On the existence and stability of cycles in five-dimensional models of gene networks

V. P. Golubyatnikov, I. V. Golubyatnikov, V. A. Likhoshvai

Journal:

Numerical Analysis and Applications

Year:

2010

Language:

english

File:

PDF, 562 KB

english, 2010

26

Generalized Chemokinetic Method for Gene Network Simulation

V. A. Likhoshvai, Yu. G. Matushkin, A. V. Ratushny, E. A. Ananko, E. V. Ignatieva, O. A. Podkolodnaya

Journal:

Molecular Biology

Year:

2001

Language:

english

File:

PDF, 54 KB

english, 2001

27

Elements of the Active Center of Silicon Transporters in Diatoms

M. A. Grachev, N. N. Denikina, S. I. Belikov, E. V. Likhoshvai, M. V. Usol'tseva, I. V. Tikhonova, R. V. Adel'shin, S. A. Kler, T. A. Shcherbakova

Journal:

Molecular Biology

Year:

2002

Language:

english

File:

PDF, 38 KB

english, 2002

28

An Integrated Computer System for Studying the Regulation of Eukaryotic Gene Expression

N. A. Kolchanov, O. A. Podkolodnaya, E. A. Ananko, D. A. Afonnikov, O. V. Vishnevsky, D. G. Vorobiev, E. V. Ignatieva, V. G. Levitskii, V. A. Likhoshvai, N. A. Omelyanchuk, N. L. Podkolodny, A. V. Rat

Journal:

Molecular Biology

Year:

2004

Language:

english

File:

PDF, 468 KB

english, 2004

29

Translation efficiency in yeasts correlates with nucleosome formation in promoters

Matushkin, Yu G., Levitsky, V.G., Orlov, Yu L., Likhoshvai, V.A., Kolchanov, N.A.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 358 KB

english, 2013

30

A plausible mechanism for auxin patterning along the developing root

Victoria V Mironova, Nadezda A Omelyanchuk, Guy Yosiphon, Stanislav I Fadeev, Nikolai A Kolchanov, Eric Mjolsness, Vitaly A Likhoshvai

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 2.06 MB

english, 2010

31

Differentiation of single-cell organisms according to elongation stages crucial for gene expression efficacy

Vitali A. Likhoshvai, Yuri G. Matushkin

Journal:

Year:

2002

Language:

english

File:

PDF, 90 KB

english, 2002

32

Microbial communities and their ability to oxidizen-alkanes in the area of release of gas- and oil-containing fluids in Mid-Baikal (Cape Gorevoi Utes)

Pavlova, O. N., Lomakina, A. V., Gorshkov, A. G., Suslova, M. Yu., Likhoshvai, A. V., Zemskaya, T. I.

Journal:

Biology Bulletin

Year:

2012

Language:

english

File:

PDF, 252 KB

english, 2012

33

HOW MULTIPLE AUXIN RESPONSIVE ELEMENTS MAY INTERACT IN PLANT PROMOTERS: A REVERSE PROBLEM SOLUTION

MIRONOVA, VICTORIA V., OMELYANCHUK, NADYA A., SAVINA, MARIA S., PONOMARENKO, PETR M., PONOMARENKO, MIKHAIL P., LIKHOSHVAI, VITALY A., KOLCHANOV, NIKOLAY A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2013

Language:

english

File:

PDF, 959 KB

english, 2013

34

Composition of the microbial communities of bituminous constructions at natural oil seeps at the bottom of Lake Baikal

V. V. Kadnikov, A. V. Lomakina, A. V. Likhoshvai, A. G. Gorshkov…

Journal:

Year:

2013

Language:

english

File:

PDF, 638 KB

english, 2013

35

Pathogenesis and Treatment of HIV Infection: The Cellular, the Immune System and the Neuroendocrine Systems Perspective

Chereshnev, V. A., Bocharov, G., Bazhan, S., Bachmetyev, B., Gainova, I., Likhoshvai, V., Argilaguet, J. M., Martinez, J. P., Rump, J. A., Mothe, B., Brander, C., Meyerhans, A.

Journal:

International Reviews Of Immunology

Year:

2013

Language:

english

File:

PDF, 897 KB

english, 2013

36

Reconstruction of the mechanisms that regulate the expression of theEscherihia coli yfiAgene under stress conditions

Khlebodarova, T. M., Oshchepkov, D. Yu., Tikunova, N. V., Babkin, I. V., Gruzdev, A. D., Likhoshvai, V. A.

Journal:

Russian Journal of Genetics: Applied Research

Year:

2013

Language:

english

File:

PDF, 280 KB

english, 2013

37

MATHEMATICAL MODEL FOR SUPPRESSION OF SUBGENOMIC HEPATITIS C VIRUS RNA REPLICATION IN CELL CULTURE

MISHCHENKO, ELENA L., BEZMATERNYKH, KIRILL D., LIKHOSHVAI, VITALY A., RATUSHNY, ALEXANDER V., KHLEBODAROVA, TAMARA M., YU. SOURNINA, NATALIA, IVANISENKO, VLADIMIR A., KOLCHANOV, NIKOLAI A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 392 KB

english, 2007

38

Replication of the subgenomic hepatitis C virus replicon in the presence of the NS3 protease inhibitors: a stochastic model

Ivanisenko, N. V., Mishchenko, E. L., Akberdin, I. R., Demenkov, P. S., Likhoshvai, V. A., Kozlov, K. N., Todorov, D. I., Samsonova, M. G., Samsonov, A. M., Kolchanov, N. A., Ivanisenko, V. A.

Journal:

Year:

2013

Language:

english

File:

PDF, 315 KB

english, 2013

39

Mathematical modeling of bacterial cell cycle: The problem of coordinating genome replication with cell growth

Likhoshvai, Vitaly A., Khlebodarova, Tamara M.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2014

Language:

english

File:

PDF, 430 KB

english, 2014

40

On the shift of a regulatory signal in models of matrix synthesis

V. A. Likhoshvai,S. I. Fadeev

Journal:

Journal of Applied and Industrial Mathematics

Year:

2013

Language:

english

File:

PDF, 578 KB

english, 2013

41

Gene expression and secondary mRNA structures in differentMycoplasmaspecies

V. S. Sokolov,V. A. Likhoshvai…

Journal:

Russian Journal of Genetics: Applied Research

Year:

2014

Language:

english

File:

PDF, 262 KB

english, 2014

42

Alternative splicing can lead to chaos

Likhoshvai, Vitaly A., Kogai, Vladislav V., Fadeev, Stanislav I., Khlebodarova, Tamara M.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2015

Language:

english

File:

PDF, 839 KB

english, 2015

43

MATHEMATICAL MODELING OF AUXIN TRANSPORT IN PROTOXYLEM AND PROTOPHLOEM OF ARABIDOPSIS THALIANA ROOT TIPS

NOVOSELOVA, EKATERINA S., MIRONOVA, VICTORIA V., OMELYANCHUK, NADYA A., KAZANTSEV, FEDOR V., LIKHOSHVAI, VITALY A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2013

Language:

english

File:

PDF, 723 KB

english, 2013

44

A CELLULAR AUTOMATON TO MODEL THE DEVELOPMENT OF PRIMARY SHOOT MERISTEMS OF ARABIDOPSIS THALIANA

AKBERDIN, ILYA R., OZONOV, EVGENIY A., MIRONOVA, VICTORIA V., OMELYANCHUK, NADEZDA A., LIKHOSHVAI, VITALY A., GORPINCHENKO, DMYTRY N., KOLCHANOV, NIKOLAI A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2007

Language:

english

File:

PDF, 596 KB

english, 2007

45

New evidence of an old problem: The coupling of genome replication to cell growth in bacteria

Khlebodarova, T. M., Likhoshvai, V. A.

Journal:

Russian Journal of Genetics

Year:

2014

Language:

english

File:

PDF, 233 KB

english, 2014

46

ON THE CHAOS IN GENE NETWORKS

LIKHOSHVAI, VITALY A., FADEEV, STANISLAV I., KOGAI, VLADISLAV V., KHLEBODAROVA, TAMARA M.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2013

Language:

english

File:

PDF, 645 KB

english, 2013

47

Combined in silico/in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance

Mironova, V. V., Omelyanchuk, N. A., Novoselova, E. S., Doroshkov, A. V., Kazantsev, F. V., Kochetov, A. V., Kolchanov, N. A., Mjolsness, E., Likhoshvai, V. A.

Journal:

Annals of Botany

Year:

2012

Language:

english

File:

PDF, 626 KB

english, 2012

48

A computer system for analysis and integrated description of regulation of the molecular-genetic system of interferon induction and action

O. E. Belova, V. A. Likhoshvai, S. I. Bazhan, V. A. Kulichkov

Year:

1995

Language:

english

File:

PDF, 465 KB

english, 1995

49

Resilience of Cholesterol Concentration to a Wide Range of Mutations in the Cell

Ratushny, A.V., Likhoshvai, V.A., Ignatieva, E.V., Goryanin, I.I., Kolchanov, N.A.

Journal:

Year:

2003

Language:

english

File:

PDF, 270 KB

english, 2003

50

On the distribution of auxin concentrations in root horizontal layer cells

Novoselova, E. S., Mironova, V. V., Khlebodarova, T. M., Likhoshvai, V. A.

Journal:

Russian Journal of Genetics: Applied Research

Year:

2015

Language:

english

File:

PDF, 653 KB

english, 2015